PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001755.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 634aa    MW: 73383.8 Da    PI: 8.2468
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001755.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.96.1e-1754147190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                              kfY +YA+ +GF++r+s++ k+ + g  +k+ +vCs+e ++e ++++       ++ +r+r+++r+gC a++  +++  +++ev +
  Itr_sc001755.1_g00003.1  54 KFYIKYASAAGFDMRRSTEIKN-KYGVSMKKYLVCSQERYKEAKDTDlmesgaPTHPKRRRTSNRVGCIARIIFRLN-GEVYEVVS 137
                              6*****************9999.777799999************9999*99998889999*****************.******** PP

                     FAR1  81 leleHnHela 90 
                              +e+ H+H+l+
  Itr_sc001755.1_g00003.1 138 FEERHTHDLC 147
                              ********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-1454147IPR004330FAR1 DNA binding domain
PfamPF105512.2E-29289381IPR018289MULE transposase domain
PROSITE profilePS5096610.262570606IPR007527Zinc finger, SWIM-type
PfamPF044347.0E-5570598IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-4581608IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MSSSNTGASD HTVEMQTCDM EESADVPKYW MTTCDPSLKP VVGQRFESLE SGIKFYIKYA  60
SAAGFDMRRS TEIKNKYGVS MKKYLVCSQE RYKEAKDTDL MESGAPTHPK RRRTSNRVGC  120
IARIIFRLNG EVYEVVSFEE RHTHDLCGDS YKPFMKMNRK LDIGHQHFIA NCAKGNIGPS  180
KTFNLYAEMV GETNKVGAMQ QDFKNYKREI LAYMKGGGGX XXXXXXXXXX XXXXXXGGDV  240
QMVLSNYIEK KSYCDDFYFE YEVNEKDQLS RVFWVDGVAR KQFSVFGEVM TFDATYQTNK  300
YKLVFVPFTG VDHHKRCVTF VAGLIAREDE DSYRWILINF KKAMGKTPPI TITDQDTAMK  360
VAIAMEFPET RHRFCMWHIM TKVGDKVGAE MAKNTEFRRV LNSVVWNEIC MPEEFENCWN  420
SVVYTYGLQE NGWLKLMYEQ RESWIPAYFQ DMFMGGLLRT TSRSESENNV FRSNTSKHMC  480
LVDFFYQFER TINRQRSKQA ELDATCNGHL PALKTPLSVE REAASIYTLA IFYQLQGEII  540
GACFFCRVRS FAVSEPIRTY MIEDDKGKSY TVVVENGSNN ISCTCRMYRR IGLLCRHAFV  600
ILKDERFDHI PAQHITPRWK IELGNSEIVI IKRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114PKRRRTS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-80FAR1-related sequence 5